Bioinformatics for laboratories and research teams
Turn sequencing data into evidence your team can use.
Alligen supports microbial genomics projects from raw reads and quality control to organism identification, AMR analysis, phylogenetics and clear, reproducible reporting.
Project-specific analysis
Reproducible workflows
Decision-ready reports
What Alligen connects
01 Sequence data FASTQ, assemblies and metadata
02 Bioinformatics QC, typing, AMR and comparison
03 Interpretation Clear outputs and next steps
Also monitoring
Cancer · infectious diseases · genetic testing · genomics · precision medicine
Bioinformatics services
Analysis designed around your biological question
Start with a focused analysis, an independent review of an existing pipeline, or a complete workflow from data intake to final report.
01
Microbial whole-genome sequencing
Quality assessment, assembly, annotation, species confirmation, strain typing and comparative analysis for bacterial and fungal sequencing projects.
Read and assembly quality control
Typing and relatedness analysis
Reproducible outputs with methods
02
AMR and genomic surveillance
Resistance-gene and mutation screening, isolate comparison and surveillance summaries that connect genomic findings with laboratory context.
03
Pipeline development and review
Documented workflows, quality checkpoints, tool selection and independent review to make recurring analyses more consistent and auditable.
04
Custom analysis and reporting
Targeted data exploration, figures, tables and concise technical reports for research, method evaluation and internal decision-making.
Have sequence data but no clear analysis plan?
Send a short description of the organism, data type, sample count and your main question.
Request a project review
Alligen bioinformatics services are for research, surveillance and analytical support. They do not replace clinical validation or medical diagnosis.
Alligen Insights
Practical analysis beyond the headline
Original articles translating diagnostic evidence, laboratory limitations and emerging technologies into useful context.
01
Infectious disease diagnostics
A practical look at why this parasite remains difficult to identify and where molecular workflows can improve detection.
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02
Molecular testing
Contamination, assay design and interpretation can all create misleading signals. This article maps the main failure points.
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03
Clinical microbiology
Why clinical suspicion and test selection matter when a treatable infection is easily missed.
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About Alligen
Independent expertise at the intersection of diagnostics and data
Alligen connects bioinformatics practice, laboratory diagnostics and the scientific literature. The goal is straightforward: help technical teams extract more value from their data and help readers find the evidence that matters.